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Louis Bergelson (lbergelson)

lbergelson

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Company:@broadinstitute

Location:United States

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broadinstitute
samtools

Louis Bergelson's repositories

bioconda-recipes

Conda recipes for the bioconda channel.

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brew

🍺 The missing package manager for macOS

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coffeecatch

CoffeeCatch, a tiny native POSIX signal catcher (especially useful for JNI code on Android/Dalvik)

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course-v3

The 3rd edition of course.fast.ai

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DataflowTemplates

Google-provided Cloud Dataflow template pipelines for solving simple in-Cloud data tasks

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DataflowTemplatesPy

Python dataflow templates for the BigQuery export project

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disq

A library for manipulating bioinformatics sequencing formats in Apache Spark

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docs-travis-ci-com

The Travis CI Documentation

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Drop-seq

Java tools for analyzing Drop-seq data

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fastai

The fastai deep learning library, plus lessons and tutorials

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gatk-gui

Demonstration of a potential GATK GUI

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GKL

Accelerated kernel library for genomics

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gradle-signing-bug

Small reproduction of a gradle bug

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homebrew-bio

:beer::microscope: Bioinformatics formulae for the Homebrew and Linuxbrew package managers

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homebrew-core

🍻 Default formulae for the missing package manager for macOS

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hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats

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htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

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java-storage

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java-storage-nio

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jenv

Manage your Java environment

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lunaris

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parabricks-wdl

Accelerated genomics workflows in the Workflow Description Language

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pipelines

Pipelines for processing malaria parasite and mosquito genome sequence data.

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plink-ng

A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Development is now focused on building out support for multiallelic, phased, and dosage data in PLINK 2.0.

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revdepcheck

R package reverse dependency checking

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Specifications

GFF and GVF specification documents

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spotbugs

SpotBugs is FindBugs' successor. A tool for static analysis to look for bugs in Java code.

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test-rename-branch

Testing how renaming a branch works

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VarDictJava

VarDict Java port

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zsh_whales_theme

My zsh theme

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