Kirti Prakash's repositories
cornell-applied-ml
Teaching materials for the applied machine learning course at Cornell Tech (online edition)
diplib
Quantitative Image Analysis in C++, MATLAB and Python
dynamic-visualization-of-high-dimensional-data
Jupyter notebooks and Python scripts associated with experiments and analyses presented in "Dynamic visualization of high-dimensional data" by Sun et al. (2022).
generative-ai-for-beginners
12 Lessons, Get Started Building with Generative AI đź”— https://microsoft.github.io/generative-ai-for-beginners/
HohlbeinLab.github.io
Github Pages
iterative-localization
Software underlying: Precision in iterative modulation enhanced single-molecule localization microscopy
kirtiprakash
Config files for my GitHub profile.
microEye
A python toolkit for fluorescence microscopy.
OpenMicroscopy
Non-comprehensive list of projects and resources related to open microscopy.
prov-gigapath
Prov-GigaPath: A whole-slide foundation model for digital pathology from real-world data
regDeconProject
code of the registration and deconvolution project
RTutor
Chat with your data via AI. http://RTutor.ai
Scientific-Inkscape
Scientific Inkscape: Inkscape extensions for figure resizing and editing
simclr
SimCLRv2 - Big Self-Supervised Models are Strong Semi-Supervised Learners
simnoise
Information driven structured illumination microscopy using noise-controlled image reconstructions
SIMPLI
SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
SimulateNPCs
Simulate structurally variable Nuclear Pore Complexes
sofipackage
Sofipackage is a Matlab-based software for super-resolution optical fluctuation imaging (SOFI) analysis.
Synplex
Computer simulator of multiplex tissue images from a set of user-defined parameters
teaching
Optics and biophysics teaching materials
the-sourdough-framework
Open source book dedicated to helping you to make the best possible sourdough bread at home.
TrackMate
TrackMate is your buddy for your everyday tracking.
WSI2DICOM
Simple prototype of converting whole slide image (WSI) to multiframe DICOM images