kirtiprakash

lfsm_latex_template

cornell-applied-ml

Teaching materials for the applied machine learning course at Cornell Tech (online edition)

cryoSOFI

diplib

Quantitative Image Analysis in C++, MATLAB and Python

dl-training

dynamic-visualization-of-high-dimensional-data

Jupyter notebooks and Python scripts associated with experiments and analyses presented in "Dynamic visualization of high-dimensional data" by Sun et al. (2022).

fastSPDM

Cremer lab codes

HohlbeinLab.github.io

Github Pages

iterative-localization

Software underlying: Precision in iterative modulation enhanced single-molecule localization microscopy

kirtiprakash

Config files for my GitHub profile.

live-coding

This is a repository containing notebooks demonstrating along corresponding with YouTube videos, coding strategies to various problems.

microEye

A python toolkit for fluorescence microscopy.

MINFLUX

mm3

Version 3 of Python mother machine analysis code

MoMA

MoMA - the MotherMachine Analyzer

mother_machine

OpenMicroscopy

Non-comprehensive list of projects and resources related to open microscopy.

PERPL-Python3

probabilistic_unet_pytorch

A Probabilistic U-Net for segmentation of ambiguous images implemented in PyTorch

psfj

PSFj - Know your microscope fluorescence

regDeconProject

code of the registration and deconvolution project

RTutor

Chat with your data via AI. http://RTutor.ai

Scientific-Inkscape

Scientific Inkscape: Inkscape extensions for figure resizing and editing

simflux

simnoise

Information driven structured illumination microscopy using noise-controlled image reconstructions

SIMPLI

SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.

SimulateNPCs

Simulate structurally variable Nuclear Pore Complexes

sofipackage

Sofipackage is a Matlab-based software for super-resolution optical fluctuation imaging (SOFI) analysis.

StateModeling

a toolbox for modeling states and transition rates between them and fitting initial distributions, rates and alike using tensorflow

WSI2DICOM

Simple prototype of converting whole slide image (WSI) to multiframe DICOM images