Kids First Data Resource Center's repositories
kf-portal-ui
:bar_chart: The Kids First Data Resource Portal and Social Network User Interface
kf-somatic-workflow
:microscope: Somatic workflow for Kids-First
kf-alignment-workflow
:microscope: Alignment workflow for Kids-First DRC
kf-rnaseq-workflow
:microscope: RNA-Seq workflow for Kids-First DRC
kf-api-fhir-service
🔥 FHIR Data Service for Kids First
kf-jointgenotyping-workflow
:microscope: Joint genotyping workflow for Kids-First DRC
kf-api-dataservice
:file_cabinet: Primary API for interacting with the Kids First data
kf-lib-data-ingest
🏭 Kids First Data Ingest Library
kf-key-management
:factory: AWS Lambda functions for storing user api tokens from third party services.
kf-cbioportal-etl
Repository of scripts used to convert dataservice metadata and DRC processed data into cbio portal loading format.
kf-germline-workflow
Repository for Germline CNV, SNV, and SV Tools and Workflows
kf-api-study-creator
📂 Powers investigator-driven data staging. Backend for Data Tracker app
kf-etl-clin-portal
Import clinical data into portal
kf-task-fhir-etl
:fire: Kids First FHIR ETL Task Service running against Dataservice
kfdrc-benchmark
Benchmarking tools and workflows
kf-longreads-workflow
This is a dev-to-production repo for the Kids First Long reads pipeline
cloud-workspace-partnership-pilot
CFDE Cloud Workspace Partnership Pilot
kf-annotation-tools
This repo contains commonly share annotation tools. Meant to be generally used as a git submodule for other variant calling workflows to centralize and simplify code development and maintainance.
kf-api-arranger
:factory: a data-model aware GraphQL API that sits above an Elasticsearch cluster
kf-api-portal-reports
📝 Generate reports based on queries built using the Kids First Portal
kf-cavatica-public-app-publisher
This repo houses scripts and guidelines on publishing a CWL app as a public app on Cavtica
kf-lambda-member-update
This lambda consume events from sqs and update elasticsearch member index
kf-persona
kids-first persona implementation
riff
:construction: A Microservice for URL Shortening and sharing.