kids-first / cloud-workspace-partnership-pilot

CFDE Cloud Workspace Partnership Pilot

CFDE Cloud Workspace Partnership (CWP) Pilot

Contents

Topic and Link	Description
Introduction to the Cloud Workspace Partnership (CWP) Pilot	Overview of the CWP Pilot Why Choose Cloud-Based Analysis?
Exploring and Accessing Datasets	Overview of Accessing Data in CAVATICA Controlled Access Data for Secondary Use Consortium Controlled Access Data Open Access Data Bring Your Own Data
Estimating Cloud Computing Costs	Principles of Cloud Computing Costs Storage and Compute Choosing Workflows Estimating Analyses Using Existing CAVATICA Workflows Bringing Your Own Workflows Cloud Cost Estimator
Applying for Collaborative Project Funding	Call for Applications
Managing Cloud Computing Costs	Managing Billing Groups on CAVATICA Cost-Saving Strategies Further Reading on Cloud Costs
Using CAVATICA - Seven Bridges Tutorials	CAVATICA Introduction and Quickstart YouTube playlist for new Cavatica users to get started Bring Your Own Tools to CAVATICA Maintaining and Versioning CWL on External Tool Repositories CAVATICA API Overview
Closing Out Your Collaborative Project	Wrapping Things Up Reproducibility in the Cloud

For more information or feedback about the “Cloud Workspace Partnership Pilot” program, on CFDE Slack reach out in the #cloud-workspace-pilot channel or send an email to Surya Saha ([e-mail]) and Eric Wenger ([e-mail]).

About the Common Fund Data Ecosystem (CFDE): The NIH Common Fund Data Ecosystem (CFDE) aims to enable broad use of Common Fund data to accelerate discovery. Common Fund programs generate a wide range of diverse and valuable data sets and knowledge designed to be used by the research community. For more information about the CFDE, visit https://commonfund.nih.gov/dataecosystem.

About the Gabriella Miller Kids First Data Resource Center (Kids First DRC): The Kids First DRC is a collaborative, pediatric research effort with the goal of understanding the genetic causes and links between childhood cancer and structural birth defects. As part of the NIH Common Fund’s Gabriella Miller Kids First Pediatric Research Program, the Kids First DRC is charged with:

• Developing data-driven platforms that integrate large amounts of genomic and clinical data from different disease types.
• Empowering the collaborative discovery, engagement, and necessary partnerships across disease communities that are crucial for progress in our biological understanding of diseases.
• Enabling rapid translation to personalized treatments for patients diagnosed with childhood cancer or structural birth defects.
• Accelerating discovery of genetic causes and shared biologic pathways within and across these conditions.

For more information, visit https://www.kidsfirstdrc.org.

About the National Institutes of Health (NIH): NIH, the nation's medical research agency, includes 27 Institutes and Centers and is a component of the U.S. Department of Health and Human Services. NIH is the primary federal agency conducting and supporting basic, clinical, and translational medical research, and is investigating the causes, treatments, and cures for both common and rare diseases. For more information about NIH and its programs, visit https://www.nih.gov.