khughitt

trump-world

TrumpWorld data exploration (RMarkdown/R/igraph)

Awesome-Bioinformatics

A curated list of awesome Bioinformatics libraries and software.

bioconductor-transcript-length

An exploration of methods for querying transcript length in Bioconductor.

bsci411-co-expression-networks

Lecture of co-expression networks for UMD BSCI411 Fall 2016 course.

eda

Exploratory Data Analysis for R

hpgltools

A collection of R functions to aid in host-pathogen genomic research

presentation-omic-sciences-r-and-bioconductor

Short presentation and demo code for a lecture on R & Bioconductor.

clusteval

Clustering Evaluation in R

cookiecutter-rmd-data-science

Cookiecutter RMarkdown Data Science Template

data-kind-annie-e-casey-2016

DataKind 2016 Data Dive: Annie E. Casey Foundation

dimRed

A Framework for Dimensionality Reduction in R

dna-seq-gatk-variant-calling

This Snakemake pipeline implements the GATK best-practices workflow

efficient-columnwise-correlation

Efficient ways to compute Pearson's correlation between columns of two matrices in various scientific computing languages

knitr

A general-purpose tool for dynamic report generation in R

linear-models-study-group

Study group focused on core concepts related to linear models and GLMs.

marker

The terminal command palette

nlm

NLM Repro workshop example repo

NMF

NMF: A Flexible R package for Nonnegative Matrix Factorization

Nvim-R

Vim plugin to work with R

Pharmacogenomics_Prediction_Pipeline_P3

pubvis

PubVis - Web Application for the Interactive Exploration and Discovery of Scientific Publications

py3status

py3status is an extensible i3status wrapper written in python

Repro_git_vcs_tutorial

A simple tutorial on Git and Github, geared at scientists and reproducible research applications.

rhub-linux-builders

Docker configuration for the R-hub Linux builders

rmarkdown

Dynamic Documents for R

SJARACNe

Scalable Tool for Gene Network Reverse Engineering

sysreqsdb

SystemRequirements mappings for R packages

tftargets

:dart: Human transcription factor target genes.

vicious

Vicious is a modular widget library for the "awesome" window manager.

wrangling-genomics

Lesson for wrangling genomics data