Keith Hughitt's repositories
network-biology-study-group
Notes and code from a network biology study group at UMD.
2016-iscb-dc-rsg-workshop-presentation
ISCB DC RSG 2016 Workshop Presentation: Co-expression network analysis using RNA-Seq data
knitrBootstrap
A framework to create bootstrap styled HTML reports from knitr Rmarkdown.
slidify-annotation_enrichment_analysis
Journal club: Annotation Enrichment Analysis: An Alternative Method for Evaluating the Functional Properties of Gene Sets
slidify-wgcna
Journal club presentation on Weighted Correlation Network Analysis (WGCNA)
urban-data-dive
Urban Data Dive: How Better Data Can Reduce Domestic Violence
brookings-ending-rural-hunger-hackathon-2015
Brookings Institute - Ending Rural Hunger Hackathon (2015)
ete
ETE is a python programming toolkit that assists in the automated manipulation, analysis and visualization of any type of hierarchical trees. This includes phylogenetic trees, clustering results and profile-based trees. It supports node annotation, programatic tree drawing, circular visualization, SVG, PNG and PDF image rendering, and more!
helpmeviz-womens-empowerment
HelpMeViz Hackathon - 2014/06/28
hidden-hunger-hackathon-2015
2015 HelpMeViz Vizathon: Hidden Hunger
irefindex-ensembl-network
Simple script to parse iRefIndex PSI MITAB files and generate an ENSEMBL gene edge list
knitcitations
Generate citations for knitr markdown and html files
nerdcommenter
Vim plugin for intensely orgasmic commenting
shiny-htmlwidget-example
Example of hosting a Shiny-like interactive plot on Github pages.
slidify-co-expr_co-reg_relationship
Journal club: Quantifying the relationship between co-expression, co-regulation and gene function (Allocco et al. 2004)
todotxt-machine
an interactive terminal based todo.txt file editor with an interface similar to mutt
urban-data-camp_youth-jobs
#UrbanDataCamp: Using Data to Help Low-Income Youth Find Jobs
Vim-R-plugin
Plugin to work with R (forked for development only)
vim-textobj-underscore
Underscore text-object for Vim