Kyle I S Harrington (kephale)

kephale

Geek Repo

Company:Chan Zuckerberg Institute for Advanced Biological Imaging

Location:Alexandria, VA, USA / Redwood City, CA, USA

Home Page:https://kyleharrington.com

Twitter:@kisharrington

Github PK Tool:Github PK Tool


Organizations
brevis-us
cellcanvas
morphonets
PreibischLab
scenerygraphics
teamtomo

Kyle I S Harrington's starred repositories

rejected-github-profile-achievements

😵 GitHub achievements that did not make the cut.

poly

A Go package for engineering organisms.

Language:GoLicense:MITStargazers:661Issues:13Issues:165

borg

Assimilate Emacs packages as Git submodules

Language:Emacs LispLicense:GPL-3.0Stargazers:253Issues:15Issues:89

pcp

PCP: Clojure Processor -- A Clojure replacement for PHP

Language:ClojureLicense:MITStargazers:231Issues:8Issues:6

brimm

Notion-inspired versatile knowledge management backed by a graph you own, full stack and open source.

License:MITStargazers:92Issues:12Issues:0

gh-notify

Veneer for the Magit/Forge GitHub porcelain

Language:Emacs LispLicense:BSD-2-ClauseStargazers:70Issues:5Issues:11

mastodon-alt

Emacs alternative mastodon layout

Language:Emacs LispLicense:GPL-3.0Stargazers:46Issues:3Issues:9

SNT

The ImageJ framework for quantification of neuronal anatomy

Language:JavaLicense:GPL-3.0Stargazers:39Issues:6Issues:96

pymaid

Python library to interface with CATMAID servers. Fully interoperable with navis.

Language:PythonLicense:GPL-3.0Stargazers:23Issues:6Issues:89

pydantic-ome-ngff

Pydantic models for OME-NGFF

Language:PythonLicense:BSD-3-ClauseStargazers:21Issues:6Issues:16

surforama

a tool for using surfaces to explore volumetric data in napari

Language:PythonLicense:MITStargazers:16Issues:2Issues:23
Language:Jupyter NotebookLicense:MITStargazers:11Issues:8Issues:7

cellcanvas

A tool to support interactive machine learning for cryoET data

Language:PythonLicense:MITStargazers:10Issues:4Issues:19

quotegp

Genetic programming using the Elixir AST

Language:ElixirStargazers:9Issues:3Issues:0
Language:JavaLicense:BSD-2-ClauseStargazers:8Issues:0Issues:0

monoqueue

Linearize your support queue

Language:PythonLicense:UnlicenseStargazers:6Issues:3Issues:1

halfway-to-i2k-skimage-napari

Repo for halfway to i2k workshop: Fundamentals of image analysis in Python with scikit-image, napari, and friends

Language:PythonLicense:BSD-3-ClauseStargazers:6Issues:2Issues:0

napari-tyssue

This is a napari plugin that supports the 3D tissue simulator, tyssue

Language:PythonLicense:BSD-3-ClauseStargazers:6Issues:3Issues:3

copick

Definitions for a collaborative cryoET annotation tool.

Language:PythonLicense:MITStargazers:5Issues:2Issues:9

proteoscope

Generating images of protein subcellular localization from sequences

Language:Jupyter NotebookLicense:NOASSERTIONStargazers:4Issues:1Issues:0

napari-geoscience-viewer

A napari plugin for quick-viewing HDF5 and NetCDF files

Language:PythonLicense:BSD-3-ClauseStargazers:4Issues:1Issues:1

napari_hub_lite

new version of the napari hub website that is much easier to maintain

Language:HTMLLicense:MITStargazers:4Issues:0Issues:0

imaging-demo-kit

imaging-demo-kit

Language:Jupyter NotebookLicense:Apache-2.0Stargazers:3Issues:2Issues:0
Language:RustLicense:BSD-3-ClauseStargazers:2Issues:1Issues:0
Language:PythonLicense:BSD-3-ClauseStargazers:2Issues:2Issues:0

cryoet-data-portal-neuroglancer

CryoET Data Portal Neuroglancer configuration helper

Language:PythonLicense:MITStargazers:1Issues:9Issues:0

napari-iohub

OME-Zarr viewer for napari with iohub as the I/O backend

Language:PythonLicense:BSD-3-ClauseStargazers:1Issues:3Issues:6

purpleair_database_analysis

Build your own database and perform data analysis for Purple Air

Language:Jupyter NotebookLicense:MITStargazers:1Issues:0Issues:0

copick_live

A Dash Plotly server visualizing CZII ML challenge pickathon with live updates

Language:PythonLicense:MITStargazers:1Issues:0Issues:0