teamtomo

membrain-seg

membrane segmentation in 3D for cryo-ET

starfile

STAR file I/O in Python

teamtomo.github.io

A collaborative knowledge sharing platform for the cryo-ET community

libtilt

Image processing for cryo-electron microscopy in PyTorch

fidder

Detect and erase gold fiducials in cryo-EM images

imodmodel

IMOD model files as pandas dataframes in Python

mdocfile

SerialEM mdoc files as pandas dataframes

mmdf

macromolecular structure files (.pdb/.mmCIF) as pandas DataFrames

cryohub

IO hub for Cryo-EM, Cryo-ET and subtomogram averaging data.

lil-aretomo

A lightweight Python API for AreTomo

yet-another-imod-wrapper

Simple API for automated tilt-series alignment in IMOD

dynamotable

Dynamo table files in Python as pandas dataframes

cryoeraser

Erase features from cryo-EM images in Python

cryotypes

Super-simple data structures for cryo-electron tomography data

cryo-et-sample-data

emfile

Basic utility to read tomography data from files in *.em format.

qvox

Quantized Voxel Array Operations

.github

docs-template

documentation template for teamtomo packages

ttmask

Mask creation CLI tool for cryo-EM/ET