kephale / imaging-demo-kit

imaging-demo-kit

imaging-demo-kit

This is a demo kit for the CZI Imaging Tech Team. The demo kit contains scripts and environment files to prepare for demos.

The tools installed by this library are currently focused on Python-based tools, but primarily napari and napari plugins.

How to use this for giving demos

You have already installed:

• mambaforge

Steps:

1. Clone the repo
2. Run the pre-setup scripts (this may take time and disk space): scripts/presenter_setup.sh

See also

There are some other resources out there covering similar topics more in-depth.

• Explorative image data science with napari (FocalPlane blog post)
• Rescaling images and pixel (an)isotropy (FocalPlane blog post)
• Interactive pixel classification and object segmentation in Napari (BioImageAnalysisNotebooks)
• Interactive object classification in Napari (BioImageAnalysisNotebooks)