Dominik Kutra's repositories
affogato-feedstock
A conda-smithy repository for affogato.
conda-forge-pinning-feedstock
A conda-smithy repository for conda-forge-pinning.
containers
Bioinformatics containers
covid-if-annotations
Annotation Tool for Immunofluorescence Assay Images
et_xmlfile-feedstock
A conda-smithy repository for et_xmlfile.
jgo
Launch Java code from the CLI, installation-free. ☕
libdvid-cpp
C++ library for accessing DVID's REST API
list-of-update-sites
The update sites ImageJ2 knows about automatically
mobie-feedstock
A conda-smithy repository for mobie.
ome-zarr-feedstock
A conda-smithy repository for ome-zarr.
ome-zarr-py
Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
pyshtools-feedstock
A conda-smithy repository for pyshtools.
r2wars
An r2wars implementation I wrote 2018(?)
scikit-image-feedstock
A conda-smithy repository for scikit-image.
SHTOOLS
SHTOOLS - Spherical Harmonic Tools
simde
Implementations of SIMD instruction sets for systems which don't natively support them.
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
tiktorch
Wrappers for Pytorch
TrackMate-Ilastik
Using Ilastik pixel classifiers as detector for TrackMate.
training-resources
Resources for teaching/preparing to teach bioimage analysis
vigra
a generic C++ library for image analysis
vigra-feedstock
A conda-smithy repository for vigra.
volumina
Volume Slicing and Editing
xtensor-python
Python bindings for xtensor