Josh Herr's repositories
quick_basic_R_tutorial
This is a quick and basic tutorial for R
2014-01-27-indiana
Bootcamp at Indiana University Jan 2014
American-Gut
American Gut open-access data and IPython notebooks
ascii_plots
Convenience function for quick and dirty data analysis
bio-info-hack
Research code for various bioinformatics projects
BugBuilder
Hands-free microbial genome assembly
crisprtools
small utilities for manipulating .crispr files
ggplot-lecture
My lecture on ggplot at Cal (spring 2013)
illumina-utils
A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).
impress.js
It's a presentation framework based on the power of CSS3 transforms and transitions in modern browsers and inspired by the idea behind prezi.com.
jekyll-lunr-js-search
Jekyll + lunr.js = static websites with powerful full-text search using JavaScript
oligotyping
Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa
R-GIS-tutorial
Spatial data in R: using R as a GIS
Rforecastio
Simple R interface to forecast.io weather data
webgl-globe
WebGL Globe is a platform for visualizing latitude longitude based information using WebGL.
WiggleTools
Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency