Jonathan King's repositories
sidechainnet
An all-atom protein structure dataset for machine learning.
jonathanking.github.io
View my personal website at
openmm
OpenMM is a toolkit for molecular simulation using high performance GPU code.
BioPython-A3MIO
A3M/A2M support for BioPython
alphafold_non_docker
Open source code for AlphaFold.
cheeseboardpizza
What's the Cheese Board Pizza Today?
docs-1
TensorFlow documentation
timeglass
Simple and unobtrusive menu bar timer for macOS.
protein-transformer
Predicting protein structure through sequence modeling
molssi-practice
Learning best practices with python
cmu-nmt-fall19
An implementation of NMT methods for 11-731 @ CMU
SpotMenu
Spotify and iTunes in your menu bar
proteinnet
Standardized data set for machine learning of protein structure
openprotein
A PyTorch framework for prediction of tertiary protein structure
instaGAN_captioner
A CNN/DCGAN Encoder ---> RNN Decoder model for captioning instagram food photos
leadit
Under development
docs
Documentation for the Koes Research Group. Most likely woefully inadequate.
openbabel
Open Babel is a chemical toolbox designed to speak the many languages of chemical data.
rgn
Recurrent Geometric Networks for end-to-end differentiable learning of protein structure
rdkit-scripts
A collection of cheminformatics scripts that use rdkit
ebola-agents
An Agent Based Approach to Modeling Ebola Outbreak
nmt
TensorFlow Neural Machine Translation Tutorial
gffcompare
classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
char-rnn
Multi-layer Recurrent Neural Networks (LSTM, GRU, RNN) for character-level language models in Torch
bitcoinHFT
A bitcoin high frequency trading program.