jonathanking

sidechainnet

An all-atom protein structure dataset for machine learning.

protein-transformer

Predicting protein structure through sequence modeling

instaGAN_captioner

A CNN/DCGAN Encoder ---> RNN Decoder model for captioning instagram food photos

bitcoinHFT

A bitcoin high frequency trading program.

ebola-agents

An Agent Based Approach to Modeling Ebola Outbreak

openfold

A fork of OpenFold that allows AF2 training with force fields

pdbfixer

PDBFixer fixes problems in PDB files

alphafold_non_docker

Open source code for AlphaFold.

BioPython-A3MIO

A3M/A2M support for BioPython

angletransformer

char-rnn

Multi-layer Recurrent Neural Networks (LSTM, GRU, RNN) for character-level language models in Torch

cheeseboardpizza

What's the Cheese Board Pizza Today?

cmu-nmt-fall19

An implementation of NMT methods for 11-731 @ CMU

docs

Documentation for the Koes Research Group. Most likely woefully inadequate.

docs-1

TensorFlow documentation

gffcompare

classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF

jonathanking.github.io

View my personal website at

leadit

Under development

molssi-practice

Learning best practices with python

nmt

TensorFlow Neural Machine Translation Tutorial

openbabel

Open Babel is a chemical toolbox designed to speak the many languages of chemical data.

openmm

OpenMM is a toolkit for molecular simulation using high performance GPU code.

OpenMMforSideChainNet

openprotein

A PyTorch framework for prediction of tertiary protein structure

periodic-table

proteinnet

Standardized data set for machine learning of protein structure

rdkit-scripts

A collection of cheminformatics scripts that use rdkit

rgn

Recurrent Geometric Networks for end-to-end differentiable learning of protein structure

SpotMenu

Spotify and iTunes in your menu bar

timeglass

Simple and unobtrusive menu bar timer for macOS.