Joel Nitta's repositories
penguins-targets
Demo repo showing how to use {targets} to analyze penguin data
targets_vcf_example
Example variant calling workflow using R targets package
japan_ferns_spatial_phy
Spatial phylogenetics of Japanese ferns
sqanti3-docker
A docker image to run SQANTI3
website-trans-test
https://joelnitta.github.io/website-trans-test/
2021-04-02-todai-slides
Rによるデータ解析入門
antrophyum_ow
Code to run biogeographic analyses for Chen et al. "Systematics and biogeography of the Old World fern genus Antrophyum"
bioc_cab_2023-07-14
Presentation on translation for Bioconductor CAB
biopak-ropen-2023-06-14
Slides for BioPackathon 2023-06-14
canaper_ms
Manuscript for canaper package
comm-call-bioinfo-targets
rOpenSci community call on using {targets} for bioinformatics pipelines
iscb-targets-intro
Slides for ISCB Academy workshop "Modular, reproducible bioinformatics workflows with the targets R package"
joelnitta
About Joel Nitta
joelnitta.github.io
Default website
jsps-2023-03-03
Slides for presentation at the Japan Society of Plant Systematics 2023
oslo-targets
Slides for Oslo {targets} workshop 2023-06-08
pbalign-docker
Dockerfile for pbalign
phyloregion
Biogeographic regionalization and spatial conservation
po4a-docker
Docker image for po4a
r-intermediate-penguins-dt
Carpentries lesson translation demo
spatial-phy-binder
Code binder for conducting spatial phylogenetics analysis
spatial-phy-workshop
Spatial phylogenetics workshop materials
taxlist
Handling taxonomic lists
thorney-beast-docker
Docker image for running "thorney beast" branch of BEAST
uehara-r
Slides for Uehara-lab R workshop