Joe Flack's repositories
sssom
Simple Standard for Sharing Ontology Mappings
mondo-ingest
Coordinating the mondo-ingest with external sources
Auto-GPT
An experimental open-source attempt to make GPT-4 fully autonomous.
AgentGPT
🤖 Assemble, configure, and deploy autonomous AI Agents in your browser.
joe-utils
A collection of reusable Python3 utilities by Joe Flack.
web-scraping
General web scraping exploration.
pma-api-open-model
PMA2020's old API; open model specification.
maps-to-buildings
Convert a map image to a list of building polygon coordinates.
ontology-access-kit
Ontology Access Kit
owl-on-fhir
Light-weight Python-based non-minimalistic OWL to FHIR converter.
comploinc-on-fhir
Temporary storage for FHIR representations of ontoglogized LOINC (CompLOINC).
mondo-on-fhir
Mondo disease ontology in FHIR format.
VEDx
The Visual Exploration of Diagnosis Codes Dashboard
fhir-owl
Transforms OWL ontologies into FHIR code systems.
rdftab.rs
RDF Tables in Rust
relation-graph
Materialize OWL existential relations
obook
OBO Organized Knowledge: Training materials for becoming an OBO engineer
interview-exercises
A repository for developing and administering exercises related to software engineering and data analysis.
omim
Data ingest pipeline for OMIM.
cli-boilerplate
Boilerplate setup for starting a new CLI project.
pyrophen
Pyrophen generates a FHIR Code system representing the Human Phenotype Ontology
knowledge-graph-change-language
Models changes to an ontology or a KG at a high level
FHIR-ValueSet-CSV-to-JSON
Tool for converting FHIR extensional value sets from CSV to JSON.