João M.C. Teixeira's repositories
python-project-skeleton
An up-to-date and explanatory Python project skeleton with continuous integration services.
joaomcteixeira.github.io
Professional webpage.
BM5-clean
Docking benchmark 5 - cleaned and ready to use for HADDOCK
dssp
The DSSP building software
fcc
Fraction of Common Contacts Clustering Algorithm for Protein Structures
haddocking.github.io
Webpage of the HADDOCK group
hpc-python
Python in High Performance Computing
IDPConformerGenerator
Build conformational representations of Intrinsically Disordered Proteins by a guided sampling of the protein torsion space. https://idpconformergenerator.readthedocs.io/
joss
The Journal of Open Source Software
LLPSWise
computational prediction of biological liquid-liquid phase separation systems
mda_cli
A MDAnalysis CLI interface
mdanalysis
MDAnalysis is a Python library to analyze molecular dynamics trajectories.
MDAnalysis.github.io
MDAnalysis home page mdanalysis.org as GitHub pages.
NiaPy
Python microframework for building nature-inspired algorithms. Official docs: http://niapy.readthedocs.io/en/stable/
pdb2sql
Fast and versatile biomolecular structure PDB file parser using SQL queries
pdbprep
preprocess PDB files for deeprankcore
Pras_Server
Pras Server is a library to repair PDB or mmCIF structures, add missing heavy atoms and hydrogen atoms and assign secondary structure by amide-amide interactions of the backbone
Pymol-script-repo
Collected scripts for Pymol
rapidfuzz
Rapid fuzzy string matching in Python and C++ using the Levenshtein Distance
SPyCi-PDB
Structural Python (Back) Calculator Interface for PDBs
wtfpython
What the f*ck Python? 😱