joaomcteixeira

João M.C. Teixeira's starred repositories

gpt-engineer

Platform to experiment with the AI Software Engineer. Terminal based. NOTE: Very different from https://gptengineer.app

Language:PythonMIT52116 508 476

ripgrep

ripgrep recursively searches directories for a regex pattern while respecting your gitignore

Language:RustUnlicense47939 290 1621

ruff

An extremely fast Python linter and code formatter, written in Rust.

Language:RustMIT31480 78 5203

tornado

Tornado is a Python web framework and asynchronous networking library, originally developed at FriendFeed.

Language:PythonApache-2.021696 983 1824

cosmopolitan

build-once run-anywhere c library

Language:CISC17948 165 548

just-the-docs

A modern, high customizable, responsive Jekyll theme for documentation with built-in search.

Language:SCSSMIT7487 62 454

git-sizer

Compute various size metrics for a Git repository, flagging those that might cause problems

Language:GoMIT3459 40 53

deepdiff

DeepDiff: Deep Difference and search of any Python object/data. DeepHash: Hash of any object based on its contents. Delta: Use deltas to reconstruct objects by adding deltas together.

Language:PythonNOASSERTION2004 26 309

dockviz

Visualizing Docker data

Language:GoApache-2.01208 50 33

foldseek

Foldseek enables fast and sensitive comparisons of large structure sets.

Language:CGPL-3.0780 19 319

ColabDesign

Making Protein Design accessible to all via Google Colab!

Language:Python557 27 67

doom-ascii

DooM in the terminal!

Language:CGPL-2.0526 6 11

ProteinFlow

Versatile computational pipeline for processing protein structure data for deep learning applications.

Language:PythonBSD-3-Clause229 8 17

dssp

Application to assign secondary structure to proteins

Language:C++BSD-2-Clause158 5 84

iteration_utilities

Utilities based on Pythons iterators and generators.

Language:CApache-2.092 4 33

python-project-skeleton

An up-to-date and explanatory Python project skeleton with continuous integration services.

Language:PythonMIT81 2 1

jazzy

Fast calculation of hydrogen-bond strengths and free energy of hydration of small molecules.

Language:PythonNOASSERTION75 2 18

protein_scoring

Generating and scoring novel enzyme sequences with a variety of models and metrics

Language:Jupyter NotebookMIT59 4 3

pdbecif

A lightweight pure python package for reading, writing and manipulating mmCIF files distributed by the wwPDB"

Language:PythonApache-2.032 4 3

voronota

Voronota is a software tool for analyzing three-dimensional structures of biological macromolecules using the Voronoi diagram of atomic balls.

Language:C++MIT25 4 5

Pras_Server

Pras Server is a library to repair PDB or mmCIF structures, add missing heavy atoms and hydrogen atoms and assign secondary structure by amide-amide interactions of the backbone

Language:Python23 1 6

taurenmd

A command-line interface for analysis of Molecular Dynamics simulations.

Language:PythonGPL-2.09 1 13

Este repositorio debe ser el punto de partida y encuentro para cualquier investigador o estudiante que quiera comenzar a trabajar con/en la UIBCDF. Si has caído aquí por otro motivo y este material te es útil, eres más que bienvenido a usarlo e interaccionar con nosotros.

Language:Jupyter NotebookNOASSERTION6 6 23