MDAnalysis

MDAnalysis

Geek Repo

working with data in the molecular sciences

Location:United States of America

Home Page:https://mdanalysis.org

Twitter:@MDAnalysis

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MDAnalysis's repositories

mdanalysis

MDAnalysis is a Python library to analyze molecular dynamics simulations.

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solvation-analysis

A comprehensive tool for analyzing liquid solvation structure.

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pmda

Parallel algorithms for MDAnalysis

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membrane-curvature

MDAnalysis tool to calculate membrane curvature.

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UserGuide

User Guide for MDAnalysis

mdacli

Command line interface for MDAnalysis

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MDAKits

The MDAnalysis Toolkits Registry

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MDAnalysis.github.io

MDAnalysis home page mdanalysis.org as GitHub pages.

MDAnalysisData

Access to data for workshops and extended tests of MDAnalysis.

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pytng

Python bindings for TNG file format

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distopia

SIMD instructions for faster distance calculations.

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transport-analysis

A Python package to compute and analyze transport properties.

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cookiecutter-mdakit

Cookiecutter for Python packages based on MDAnalysis

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mdahole2

An MDAKit implementing a Python interface for the HOLE program.

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waterdynamics

Analysis of water dynamics in molecular dynamics trajectories and water interactions with other molecules.

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RDKitConverter-benchmark

Benchmark for the RDKitConverter's inferring of bond orders and charges

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benchmarks

Performance benchmarks of MDAnalysis provided by ASV.

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mdgeomkit

Simple cookie-cutter based MDAKit (for Workshop teaching)

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UGM2024

Materials for the 2024 MDAnalysis User Group Meeting

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mdaencore

Ensemble overlap comparison software for molecular data.

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branding

Resources for MDAnalysis branding

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helanal

A package to characterise the geometry of protein helicies.

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install-mdanalysis

Action to install MDAnalysis

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PathSimAnalysis

An MDAKit that calculates the geometric similarity of molecular dynamics trajectories using path metrics such as the Hausdorff or Fréchet distances.

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pypi-deployment

Reusable github action to package, deploy and and check code to PyPi & TestPyPi

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