Johannes Soltwedel's repositories
napari-stl-exporter
Napari plugin to export stl files
Slice2Volume_CodeAndDocs
# Slice2Volume_Data This repository hosts all code that was used to process image data in the Slice2Volume data repository: https://rodare.hzdr.de/record/801
FociCounter
Performs auto-segmentation of cell nuclei. User then picks viable cells manually and the number of gH2AX foci are counted and their sizes measured.
napari-spatial-statistics
Calculate spatial statistics in Napari
napari-animation
A napari plugin for making animations
PoL-BioImage-Analysis-TS-GPU-Accelerated-Image-Analysis
PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track
radiographic_workflow_evaluation
Scripts and documents to quantify the quality of the current radiographic workflow for animal irradiation
CLIc_prototype
GPU-accelerated Image Processing library
code-collection
Collection of useful applications
cookiecutter-napari-assistant-plugin
Cookiecutter for napari plugins
Hackathon_Barcelona_2023
Collection of scripts and notebooks for surface processing and analysis tools
jo-mueller
My personal introduction
napari-boardgame-maker
Create 3d-printable hexagonal boardgame tiles from 2D image data
napari-omero
Browse your OMERO database from within napari.
napari-skimage-regionprops
Feature extraction for labeled objects in images using regionprops from scikit-image
pn2v
This is our implementation of Probabilistic Noise2Void
pyclesperanto
GPU-accelerated Image Processing library using OpenCL
qupath-docs
QuPath documentation
ScattERR
This project is part of the development of processes and analytical methods for high-precision irradiation of small animals with protons. This script improves the setup of proton irradiation. With the appearing user interface one can handle three different axes with two scatteres on it (one scatterer can only move in horizontal direction and the other one in horizontal and vertical direction). Also after measuring the dose profile of the beam, one can adjust the second scatterer to improve the homogeneity of the dose field for a better irradiation of biological cells.
scipy
SciPy library main repository
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks