EPySeg is a package for segmenting 2D epithelial tissues. EPySeg also ships with a graphical user interface that allows for building, training and running deep learning models. Training can be done with or without data augmentation (2D-xy and 3D-xyz data augmentation arejust supported). EPySeg relies on the segmentation_models library. EPySeg source code is available here. Cloud version available here.
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Install python 3.7 or Anaconda 3.7 (if not already present on your system)
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In a command prompt type:
pip install --user --upgrade epysegor
pip3 install --user --upgrade epysegNB:
- To open a command prompt on Windows press 'Windows'+R then type 'cmd'
- To open a command prompt on MacOS press 'Command'+Space then type in 'Terminal'
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To open the graphical user interface, type the following in a command:
python -m epysegor
python3 -m epyseg