Johannes Soltwedel's repositories
napari-stl-exporter
Napari plugin to export stl files
Slice2Volume
Script that registers Histology slices to volumetric image data
napari-shape-odyssey
Shape analysis in napari
napari-vedo-bridge
Ease transition between napari and vedo
napari-process-points-and-surfaces
Process and analyze surfaces using open3d and vedo in napari.
napari-segment-anything
Segment Anything Model (SAM) native Qt UI
PoL-BioImage-Analysis-TS-GPU-Accelerated-Image-Analysis
PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track
biaplotter
A base napari plotter widget for interactive plotting
biomero
BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster
blog
Most of us study and work at the Bio-image Analysis Technology Development group at the DFG Cluster of Excellence “Physics of Life” at the TU Dresden. We blog about image data science, knowledge exchange and research data management in the life sciences.
cellpose-napari
napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
code-collection
Collection of useful applications
core-bioimage-io-python
Python libraries for loading, running and packaging bioimage.io models
ezomero
A module with convenience functions for writing Python code that interacts with OMERO.
iSeg
Interactive 3D Segmentation via Interactive Attention
napari
napari: a fast, interactive, multi-dimensional image viewer for python
napari-boardgame-maker
Create 3d-printable hexagonal boardgame tiles from 2D image data
napari-stress
Interactive surface analysis in napari for bio-mechanical stress measurement
napari-time-slicer
A meta plugin for processing timelapse data timepoint by timepoint in napari
omero-figure
An OMERO.web app for creating Figures from images in OMERO
omero-py
Python project containing Ice remoting code for OMERO
pn2v
This is our implementation of Probabilistic Noise2Void
pyFM
Python implementation of Functional Maps
stardist
StarDist - Object Detection with Star-convex Shapes
vedo
A python module for scientific analysis of 3D data