Jeremy Delahanty's repositories
bruker_control
Repository for code running the lab's multi-photon imaging experiments at the Bruker Ultima Investigator scope. Unites Arduino, Prairie View, and GenTL machine cameras in Python.
Analyzing_Neural_Time_Series
python implementations of Analyzing Neural Time Series Textbook
bruker_pipeline
Python implementation of data processing pipeline for data from the Bruker Ultima microscope in conjunction with bruker_control.
compress-multiphoton
Compression for multiphoton calcium imaging movies and stacks
daisy
Block-wise task scheduling for large nD volumes.
datajoint-python
Relational data pipelines for the science lab
datashuttle
Tool for the creation, validation and transfer of neuroscience project folders.
DeepLabCut
Markerless pose estimation of user-defined features with deep learning for all animals, including humans
docker-stacks
Ready-to-run Docker images containing Jupyter applications
DongLab
Repository for code generated for Dr. Xinzhong Dong's lab.
hhmi_summer
Workbooks for some basic coding tutorials with members of Janelia Meyerhoff Scholars
jhu_statsforlabscientists
Statistics Course in JHU SPH
lab-programming-workshop
A workshop for lab meeting about some basics of best practices for writing scientific code!
ln2f
Metadata generation for animals, experiments, equipment, and reagents.
mastodon
A glitchy but lovable microblogging server
NeuroBlueprint
Lightweight data specification for systems neuroscience, inspired by BIDS.
nwb-schema
Data format specification schema for the NWB neurophysiology data format
nwb_hackathons
Repository for collecting materials from nwb hackathons
pain-pipeline
Cool pain pipeline, would be epic to throw facial expressions at this...
pynwb
A Python API for working with Neurodata stored in the NWB Format
sleap_benchmarking
Benchmarking Dr. Talmo Pereira's SLEAP in the Tye Lab
tweets
janky twitter replacement.