jmdelahanty

spack

A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

imgui

Dear ImGui: Bloat-free Graphical User interface for C++ with minimal dependencies

streamer-example

Example of streaming video frames from CUDA computation to OpenGL and rendering with Dear ImGui

simple_image_formats

Simplifying image formats by consolidating file metadata into headers and footers

FFmpeg

Mirror of https://git.ffmpeg.org/ffmpeg.git

Label3D

Labeling GUI for multi-camera tracking

autopilot-paper

Manuscript for Autopilot: https://www.biorxiv.org/content/10.1101/807693v1

BigStitcher-Spark

Running compute-intense parts of BigStitcher distributed

xarray-tensorstore

voluseg

pipeline for volumetric cell segmentation

PyZebraScope_public

This is a public repository for PyZebrascope, an open-source Python software for controlling light-sheet microscopes for zebrafish

movingpandas

Movement trajectory classes and functions built on top of GeoPandas

VirtualCam

Virtual camera is created only using opencv and numpy. It simulates a camera where we can control all its parameters, intrinsic and extrinsic to get a better understanding how each component in the camera projection matrix affects the final image of the object captured by the camera.

joss-migrate-pmc

migrate joss-papers to pmc format (see `sneakers-the-rat/joss-papers-pmc`)

tuna

:fish: Python profile viewer

zotero

Zotero is a free, easy-to-use tool to help you collect, organize, annotate, cite, and share your research sources.

openlibrary

One webpage for every book ever published!

Eel

A little Python library for making simple Electron-like HTML/JS GUI apps

n5-hdf5

Best effort N5 implementation on HDF5 files (despite the irony).

datashuttle

Tool for the creation, validation and transfer of neuroscience project folders.

emdocs

A minor mode for emacs to create buffers readily editable by multiple users over the internet.

tqdm

:zap: A Fast, Extensible Progress Bar for Python and CLI

Miniscope-DAQ-QT-Software

Software for streaming and controlling neural and behavioral data from freely behaving animals

ewatercycle

Python package for running hydrological models

simba

SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers

ethoscopy

DeepLabCut

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

n5-universe

Functionality shared across all n5

lightning-pose

Accelerated pose estimation and tracking using semi-supervised convolutional networks.

movement

Python tools for analysing body movements across space and time