Jeremy Delahanty (jmdelahanty)

jmdelahanty

Geek Repo

Company:HHMI Janelia

Location:Ashburn, VA

Twitter:@science_is_hard

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Jeremy Delahanty's repositories

bruker_control

Repository for code running the lab's multi-photon imaging experiments at the Bruker Ultima Investigator scope. Unites Arduino, Prairie View, and GenTL machine cameras in Python.

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resources

PyMC3 educational resources

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autopilot

Distributed behavioral experiments

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compress-multiphoton

Compression for multiphoton calcium imaging movies and stacks

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daisy

Block-wise task scheduling for large nD volumes.

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datajoint-python

Relational data pipelines for the science lab

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DeepLabCut

Markerless pose estimation of user-defined features with deep learning for all animals, including humans

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docker-stacks

Ready-to-run Docker images containing Jupyter applications

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lab-programming-workshop

A workshop for lab meeting about some basics of best practices for writing scientific code!

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Neural_Decoding

A python package that includes many methods for decoding neural activity

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neuropixels

Information about Neuropixels electrode arrays

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nwb-schema

Data format specification schema for the NWB neurophysiology data format

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nwb_hackathons

Repository for collecting materials from nwb hackathons

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open-ephys

Compiled binaries for Open Ephys GUI (https://github.com/open-ephys/plugin-GUI)

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openapi-directory

🌐 Wikipedia for Web APIs. Directory of REST API specs in OpenAPI(fka Swagger) 2.0 format.

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opencv

Open Source Computer Vision Library

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pain-pipeline

Cool pain pipeline, would be epic to throw facial expressions at this...

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plugin-GUI

Open Ephys GUI with plugin architecture

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psychopy

For running psychology and neuroscience experiments

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pycodestyle

Simple Python style checker in one Python file

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pynwb

A Python API for working with Neurodata stored in the NWB Format

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sleap

A deep learning framework for multi-animal pose tracking.

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spykes

Tools for spike data analysis and visualization

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spykesML

A class for using ML algorithms for spike prediction

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sympy

A computer algebra system written in pure Python

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tifffile

Read and write TIFF files. Forked from https://pypi.org/project/tifffile

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tweets

janky twitter replacement.

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