Isaac Virshup's repositories
sc-interchange
Better interchange for single cell tools
altair
Declarative statistical visualization library for Python
altair-transform
Evaluation of Vega-Lite transforms in Python
altair_saver
Altair extension for saving charts in a variety of formats.
anndata-feedstock
A conda-smithy repository for anndata.
basic_project_template
Primarily designed for new students and those new to version control, this repository can work as a basic template to start working on a bioinformatics project within the Wells Lab.
bbknn
Batch balanced KNN
bioconda-recipes
Conda recipes for the bioconda channel.
cellBrowser
Python pipeline and Javascript scatter plot library for single-cell datasets
diffxpy
Differential expression analysis for single-cell RNA-seq data.
DimensionalData.jl
Named dimensions and indexing for julia arrays and other data
learnxinyminutes-docs
Code documentation written as code! How novel and totally my idea!
llvmlite
A lightweight LLVM python binding for writing JIT compilers
NearestNeighborDescent.jl
Efficient approximate k-nearest neighbors graph construction and search in Julia
numba
NumPy aware dynamic Python compiler using LLVM
numpy
The fundamental package for scientific computing with Python.
ozsinglecell2019
Data challenge for OzSingleCell 2019
Palantir
Single cell trajectory detection
pygraphblas
GraphBLAS for Python
pynndescent
A Python nearest neighbor descent for approximate nearest neighbors
python-igraph
Python interface for igraph
resplat-numba-workshop
Numba workshop for Research Platforms
scanpy-interactive
Where I'll be putting some tests for interactive scanpy plotting.
scrna2019
supporting code for the multinomial single cell RNA-Seq paper
sparse_wrapper
Array-like wrapper for sparse matrices
umap
Uniform Manifold Approximation and Projection
vega_datasets
A Python package for online & offline access to vega datasets