Isaac Virshup's repositories
anndata-benchmarks
Benchmarks of AnnData using asv
gh-pr-create-web-with-template
Demo for bug report
anndata
Annotated data.
anndataR
AnnData interoperability in R
array-api-compat
Compatibility layer for NumPy to support the Array API
asv
Airspeed Velocity: A simple Python benchmarking tool with web-based reporting
binsparse-specification
A cross-platform binary storage format for sparse data, particularly sparse matrices.
datashader
Reveal everything even in your largest datasets, by turning them into images.
ecosystem-packages
Registry for scverse ecosystem packages
github-playground
Where I can play around with github features
jp
CLI for Jupyter convenience
kerchunk
Cloud-friendly access to archival data
numcodecs
A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.
pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
pytest
The pytest framework makes it easy to write small tests, yet scales to support complex functional testing
scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
scanpy-tutorials
Scanpy Tutorials.
scikit-learn
scikit-learn: machine learning in Python
scipy
Scipy library main repository
scverse-tutorials
Tutorials for learning scverse
sklearn-ann
Integration with (approximate) nearest neighbors libraries for scikit-learn + clustering based on with kNN-graphs.
sparse
Sparse multi-dimensional arrays for the PyData ecosystem
spatialdata
Spatial Data
xarray
N-D labeled arrays and datasets in Python
zarr-python
An implementation of chunked, compressed, N-dimensional arrays for Python.
zeps
Zarr Enhancement Proposals