Roman Chernyatchik's repositories
ham
Codeplugs and programming templates for analog HAM radios
combined-pvalues
combining p-values using modified stouffer-liptak for spatially correlated results (probes)
dnmtools
Tools for analyzing DNA methylation data
munich-scripts
Some useful scripts simplifying bureaucracy
esp_ghota
esp32 OTA Component to update firmware from Github Releases
methpipe
A pipeline for analyzing DNA methylation data from bisulfite sequencing.
Bismark
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
python-miio
Python library & console tool for controlling Xiaomi smart appliances
intellij-platform-plugin-template
Template repository for creating plugins for IntelliJ Platform
xiaomi_airpurifier
Xiaomi Mi Air Purifier and Xiaomi Mi Air Humidifier integration for Home Assistant
fastqcparser
Python code to compute adatper content in reads, kmer content, per-base-GC content (at a specific position in a read alignment, against reference genome), per base NC content (at a specific position in a read alignment against the reference genome), per base seq quality (across aligned reads), per base sequence content, per base quality scores, per tile sequence quality
BGI_vs_Illumina_Benchmark
This repository contains code related to the publication "Comparative performance of the BGI and Illumina sequencing technology for single-cell RNA-sequencing" by Senabouth et al.
snakemake
This is the development home of the workflow management system Snakemake. For general information, see
epdiy
EPDiy is a driver board for affordable e-Paper (or E-ink) displays.
BAMscale
BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.
methylKit
R package for DNA methylation analysis
snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
sagemaker-deployment
Code and associated files for the deploying ML models within AWS SageMaker
deep-learning-v2-pytorch
Projects and exercises for the latest Deep Learning ND program https://www.udacity.com/course/deep-learning-nanodegree--nd101
deep-learning
Repo for the Deep Learning Nanodegree Foundations program.
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
bioconda-recipes
Conda recipes for the bioconda channel.
ChromosomeMappings
This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
SonoffLAN
Control Sonoff Devices with eWeLink firmware over LAN from Home Assistant
home-assistant.io
:blue_book: Home Assistant User documentation
core
:house_with_garden: Open source home automation that puts local control and privacy first
Z-Stack-firmware
Compilation instructions and hex files for Z-Stack firmwares