Roman Chernyatchik's repositories
aind2-cnn
AIND Term 2 -- Lesson on Convolutional Neural Networks
chiptune
ChIPtune: chip-seq experiment similarity search
pybam
Very simple, pure python, BAM file reader [Fork - Waiting for pull-request to be accepted]
MACS
MACS -- Model-based Analysis of ChIP-Seq
dna-me-pipeline
DCC/DAC methylation pipeline source
epigeneticclock
Calculate DNA methylation age using Horvath 2013 method
EpigenomicsTutorial-ISMB2017
Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague
edmr-1
Optimized DMR analysis based on bimodal normal distribution model and cost function for regional methylation analysis.
metaseq
Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data
pybedtools
Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)
spp
SPP - R package for analysis of ChIP-seq and other functional sequencing data
chipatlas
Source codes of ChIP-Atlas
yadisk-direct
Get real direct links usable with tools like curl or wget for files stored in Yandex.Disk.
bwa-meth
align BS-Seq reads and extract methylation without intermediate temp files
edmr
Automatically exported from code.google.com/p/edmr
Caffo-Coursera
A repository of my Coursera latex code and notes
cucumber
BDD that talks to domain experts first and code second
minitest-reporters
Reporters for MiniTest
rspec-core
Rspec-2 runner and formatters
rspec-expectations
Rspec-2 expectations (should and matchers)
rspec-dev
Rspec-2 development environment
rspec-mocks
Rspec-2 doubles (mocks and stubs)
rspec
Behaviour Driven Development framework for Ruby
zen-coding-rm-plugin
RubyMine extension written on Ruby which adds support for Zen-Coding snippets
cucumber-rails
Rails Generators for Cucumber with localized steps for Capybara and Webrat