iromeo

Roman Chernyatchik's repositories

deep-learning-v2-pytorch

Projects and exercises for the latest Deep Learning ND program https://www.udacity.com/course/deep-learning-nanodegree--nd101

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BAMscale

BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.

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BGI_vs_Illumina_Benchmark

This repository contains code related to the publication "Comparative performance of the BGI and Illumina sequencing technology for single-cell RNA-sequencing" by Senabouth et al.

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bioconda-recipes

Conda recipes for the bioconda channel.

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Bismark

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

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ChromosomeMappings

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

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combined-pvalues

combining p-values using modified stouffer-liptak for spatially correlated results (probes)

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core

:house_with_garden: Open source home automation that puts local control and privacy first

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deep-learning

Repo for the Deep Learning Nanodegree Foundations program.

Language:Jupyter NotebookMIT010

dnmtools

Tools for analyzing DNA methylation data

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epdiy

EPDiy is a driver board for affordable e-Paper (or E-ink) displays.

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esp_ghota

esp32 OTA Component to update firmware from Github Releases

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Python code to compute adatper content in reads, kmer content, per-base-GC content (at a specific position in a read alignment, against reference genome), per base NC content (at a specific position in a read alignment against the reference genome), per base seq quality (across aligned reads), per base sequence content, per base quality scores, per tile sequence quality

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