ihh

gfftools

Perl scripts for working with the GFF format

zoogas

Z00 G45. A simple entropy-maximizing game on a Lotka-Volterra cellular automaton

quaff

FASTA/FASTQ alignment

biomake

Make-like build system based on prolog

bioe241

Materials for UC Berkeley class BioE241

boswell

IDE for multiplayer choice-based fiction

gertie

guile-json

A basic JSON parser written in Guile scheme

hg19-perl

Perl scripts for munging UCSC hg19 table dumps

rnastatalign-paper

Paper: "Evolutionary Triplet Models of Structured RNA", PLoS Comp Biol 2009

choicescript

ChoiceScript is a language for developing multiple-choice games.

funkscene

A series of interesting choices.

jbrowse

AJAX Genome Browser

nanopair

schooz

Scheme hypertext framework

tag-parser

Algorithms to parse biological tree-adjoining grammars

transducer-tutorial

VivaGraphJS

Graph drawing library for JavaScript

d3

A JavaScript visualization library for HTML and SVG.

darkroomjs

Extensible image editing tool in your browser

dracula

JavaScript browser based layout and representation of connected graphs.

gp120sim

Indel Historian simulation benchmark

grained

Generate animated noise texture with grained.js

klib

A standalone and lightweight C library

nanopair-data

quaff-appnote

Applications Note for quaff

rotunda

shotgunpoet

sigma.js

an open-source lightweight JavaScript graph drawing library

Twiki-to-Mediawiki

Converts twiki .txt files to the mediawiki format.