ihh

spongelife

machineboss

Bioinformatics Open Source Sequence machine

biomake

GNU-Make-like utility for managing builds and complex workflows

bracery

Procedural text generator, somewhat compatible with Tracery

poreover

Nanopore basecalling and consensus decoding

jsbeeb

Javascript BBC micro emulator

corpora

A collection of small corpuses of interesting data for the creation of bots and similar stuff.

fast5

A C++ header-only library for reading Oxford Nanopore Fast5 files

VivaGraphJS

Graph drawing library for JavaScript

dracula

JavaScript layout and representation of connected graphs.

spinteny

3-d comparative genomics visualization

sigma.js

A JavaScript library aimed at visualizing graphs of thousands of nodes and edges

emscripten

Emscripten: An LLVM-to-WebAssembly Compiler

schooz

Scheme hypertext framework

gertie

transducer-tutorial

bioe241

Materials for UC Berkeley class BioE241

pixelzoo

codonhmm

quip

Compressing next-generation sequencing data with extreme prejudice.

tag-parser

Algorithms to parse biological tree-adjoining grammars

gfftools

Perl scripts for working with the GFF format

biwascheme

Scheme interpreter written in JavaScript

mTEA

Mosquito TE Annotation

jbrowse

AJAX Genome Browser

crammer

Reference-based compression of SRA data

jbrowse

AJAX Genome Browser

hg19-perl

Perl scripts for munging UCSC hg19 table dumps

PhylOTU

PhylOTU identifies microbial OTUs from metagenomic data

undum

A client-side framework for narrative hypertext interactive fiction.