Jason Stajich's starred repositories
applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2020
TGS-GapCloser
A gap-closing software tool that uses long reads to enhance genome assembly.
cas-offinder
An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.
unite-train
🍄 Qiime2 ITS classifiers for the UNITE database
SprayNPray
Rapid and simple taxonomic profiling of genome and metagenome contigs
P_RNA_scaffolder
use paired-end transcriptome reads to scaffold genomes
Phyla_AMPHORA
A Phylum-specific Automated Phylogenomic Inference Pipeline for Bacterial Sequences.
ccgp_workflow
Snakemake+python workflow to highly parallelize variant calling in non-model organisms
kakapo_aspergillosis
Working directory for analysis of kākāpō _Aspergillus_ isolates