hyphaltip

subopt-kaks

Suboptimal alignments and Ka, Ks calculations

hyphaltip.github.io

GitHub home for hyphaltip

smudgeplot

Inference of ploidy and heterozygosity structure using whole genome sequencing data

2022_AoC

2022 Advent of Code

akutils-v1.2

akutils with massive updates over v1.1 to functionality and command line interface.

autovectorscreen

Process vectorscreening locally

bioconda-recipes

Conda recipes for the bioconda channel.

blobtools

Application for the visualisation of draft genome assemblies and general QC

CASIS_pogenome

CASIS strain analysis

CheckM2

Assessing the quality of metagenome-derived genome bins using machine learning

CIndex

CIndex for fastq indexing

CV

My CV

fungalgenomes.org

FungalGenomes / Hyphaltip blog

hpcc_slurm_examples

Slurm Examples

ICArmenian-Mycologists.github.io

lab site test

impala

Liftoff

An accurate GFF3/GTF lift over pipeline

lighttpd-feedstock

A conda-smithy repository for lighttpd.

modeltest

Best-fit model selection

PhyKIT

a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies

pod5-file-format

Pod5: a high performance file format for nanopore reads.

PopGenomics_Elasticomyces_elasticus

Population Genomics of E. elasticus

process_ncbi_contam_report

Take NCBI contam report and filter out regions

q2-cutadapt

q2-cutadapt for multicore support for demux

snpArcher

Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.

SnpEff

styles

Official repository for Citation Style Language (CSL) citation styles.

ucr-hpcc.github.io-1

Website for UCR's HPCC

veba

A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes

wesanderson

A Wes Anderson color palette for R