hypercompetent

Lucas Graybuck's starred repositories

xsv

A fast CSV command line toolkit written in Rust.

Language:RustUnlicense10359 100 255

ast-grep

⚡A CLI tool for code structural search, lint and rewriting. Written in Rust

Language:RustMIT7352 24 475

machine_learning_complete

A comprehensive machine learning repository containing 30+ notebooks on different concepts, algorithms and techniques.

Language:Jupyter NotebookMIT4611 84 5

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

Language:C++MIT1900 50 519

tidyexplain

🤹‍♀ Animations of tidyverse verbs using R, the tidyverse, and gganimate

Language:RCC0-1.0763 31 21

scg_lib_structs

Collections of library structure and sequence of popular single cell genomic methods

Language:HTML424 32 13

jupyter-scatter

Interactive 2D scatter plot widget for Jupyter Lab and Notebook. Scales to millions of points!

Language:PythonApache-2.0383 8 57

fgsea

Fast Gene Set Enrichment Analysis

Language:RNOASSERTION372 19 127

somalier

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

Language:NimMIT264 9 129

bifrost

Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs

Language:C++BSD-2-Clause204 12 72

annotables

R data package for annotating/converting Gene IDs

Language:R161 13 18

d4-format

The D4 Quantitative Data Format

Language:RustMIT157 11 67

SEACells

SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data

Language:Jupyter NotebookGPL-2.0145 6 60

bpnet

Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them

Language:Jupyter NotebookMIT141 15 39

twofunctionsmostdays

Sharing two #rstats functions, most days.

Language:R111 130

R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.

Language:HTMLGPL-3.092 4 123