Giters
JiekaiLab
/
scTE
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102
Watchers:
4
Issues:
97
Forks:
28
JiekaiLab/scTE Issues
no hdf5 out and file not found error
Updated
3 months ago
Comments count
9
depracation waring and filenotfounderror
Updated
3 months ago
Comments count
2
No mitochondrial gene detected after running scTE
Updated
3 months ago
Comments count
11
TE names
Updated
3 months ago
scTE run taking many days
Closed
4 months ago
Comments count
5
Using scTE for T2T (list index out of range error)
Closed
4 months ago
Comments count
2
The number of cells is not consistent with the result of cellranger
Updated
5 months ago
Comments count
1
gene expression from scTE were not consistent with cellranger
Updated
5 months ago
Comments count
2
"IndexError: list index out of range" when using scTE_build
Closed
5 months ago
Comments count
5
RNA-seq data processing
Updated
6 months ago
Comments count
5
Why do I encounter this error when opening scTE?
Updated
6 months ago
Comments count
6
scTEATAC error
Updated
6 months ago
Requires python >= 3.9, not 3.6
Updated
6 months ago
Comments count
12
Output matrix with a series of numbers in gene/TE names
Closed
6 months ago
Comments count
4
Questions regarding preprocessing and integration of scTE with other tools
Updated
6 months ago
Comments count
1
filterCRs IndexError:list index out of range
Updated
6 months ago
Comments count
7
How touse output from scTE pipeline to generate a Seurat object
Updated
6 months ago
TE file and species issue
Updated
6 months ago
Comments count
2
ValueError: Invalid Mode: uR
Updated
7 months ago
Comments count
3
How do I find which ones are TEs and which are genes?
Updated
7 months ago
Comments count
1
running for a while but not sure what the progress is
Updated
8 months ago
Comments count
1
scTE exon/UTR TE counts inclusion
Updated
8 months ago
Comments count
1
IndexError: list index out of range
Updated
8 months ago
Comments count
4
Warning message Query V350183366L1C005R01400986149/1 is marked as paired, but its mate does not occur next to it in your BAM file. Skipping.
Updated
8 months ago
Comments count
2
Wrong example of ATAC
Updated
8 months ago
Comments count
1
Broad cell type clustering from TE counts alone
Closed
8 months ago
Comments count
1
Not getting significant read counts
Updated
9 months ago
Comments count
3
How scTE infers TEs from scRNA-seq
Closed
9 months ago
For the same bam file, why is there a big difference in the total number of umi tools quantities and scTE quantities?
Closed
a year ago
running scTE on Parse-seq data
Updated
a year ago
Can scTE handle plate-based single cell sequencing data, like Smart-seq
Updated
a year ago
Only detecting 3 cells expressing at least 200 genes
Updated
a year ago
Comments count
2
The input file unassigned_alignments.bam has no cell barcodes information
Updated
a year ago
Comments count
2
Details about running scTEATAC in 10X format
Closed
a year ago
Comments count
3
Too few genes when applying scTE on scATAC-seq data
Closed
a year ago
Comments count
1
Wired Gene name in output h5ad file
Updated
a year ago
Comments count
1
scTE cannot run due to a lack of "="
Updated
a year ago
Comments count
2
'Calculating expression' getting killed
Updated
a year ago
Comments count
1
scTE returns empty csv files
Updated
a year ago
Comments count
4
Suggestion - more inclusive tags for barcodes
Updated
a year ago
Comments count
1
Difference between two version of hg38.exclusive.idx
Updated
a year ago
Comments count
1
scTE: TypeError: no supported conversion for types: (dtype('<U4'),)
Updated
a year ago
Comments count
11
Coordinates of TE duplicates (dup1 ... dupn)
Updated
a year ago
scTEATAC
Updated
a year ago
Comments count
1
"outSAMmultNmax" STAR argument for multimapping reads?
Updated
2 years ago
Comments count
1
error kindly help
Updated
2 years ago
Comments count
2
how to understand the output file ?
Closed
2 years ago
Remove "U" mode from open()
Closed
2 years ago
Comments count
2
How to make hg38.exclusive.idx
Updated
2 years ago
Comments count
1
Hidden Dependency on SAMtools and Question Regarding STARsolo Runs
Updated
2 years ago
Comments count
2
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