handstad

followers

following

stars

Oslo University Hospital

Oslo, Norway

Tony Håndstad's starred repositories

awesome-selfhosted

A list of Free Software network services and web applications which can be hosted on your own servers

NOASSERTION186753 2435 804

the-art-of-command-line

Master the command line, in one page

150863 2844 249

sqlmodel

SQL databases in Python, designed for simplicity, compatibility, and robustness.

Language:PythonMIT13586 150 331

pyodide

Pyodide is a Python distribution for the browser and Node.js based on WebAssembly

Language:PythonMPL-2.011715 127 1645

pygwalker

PyGWalker: Turn your pandas dataframe into an interactive UI for visual analysis

Language:PythonApache-2.010690 65 188

software-architecture-books

A comprehensive list of books on Software Architecture.

lux

Automatically visualize your pandas dataframe via a single print! 📊 💡

Language:PythonApache-2.05064 89 234

fully-homomorphic-encryption

An FHE compiler for C++

Language:C++Apache-2.03482 89 36

openfold

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

Language:PythonApache-2.02618 46 327

RFdiffusion

Code for running RFdiffusion

Language:PythonNOASSERTION1569 39 178

ProteinMPNN

Code for the ProteinMPNN paper

Language:Jupyter NotebookMIT870 20 83

easyauth

Create a centralized Authentication and Authorization token server. Easily secure FastAPI endpoints based on Users, Groups, Roles or Permissions with very little database usage.

Language:PythonMIT540 11 52

redun

Yet another redundant workflow engine

Language:PythonApache-2.0492 16 50

CKG

Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge discovery making use of all the information contained in the graph

Language:Jupyter NotebookMIT416 25 62

fgbio

Tools for working with genomic and high throughput sequencing data.

Language:ScalaMIT305 20 403

polars-cookbook

Recipes for using Python's polars library

Language:Jupyter Notebook23500

seqlike

Unified biological sequence manipulation in Python

Language:PythonApache-2.0200 8 35

d4-format

The D4 Quantitative Data Format

Language:RustMIT150 10 65

pgsqlite

Load sqlite databases into Postgres databases

Language:PythonMIT119 3 4

behaving

Behavior-Driver-Development for multi-user web/email/sms applications

Language:PythonNOASSERTION100 13 35

syntheseus

Package for Retrosynthetic Planning

Language:PythonMIT95 10 6

pystructurizr

A Python DSL inspired by Structurizr, intended for generating C4 diagrams

Language:PythonMIT72 4 3

htsget-rs

A server implementation of the htsget protocol for bioinformatics in Rust

Language:RustMIT37 4 77

data-connect

Standard for describing and searching biomedical data developed by the Global Alliance for Genomics & Health.

Language:HTMLApache-2.024 11 84

variantgrid

VariantGrid public repo

Language:PythonNOASSERTION23 3 953

va-spec

An information model for representing variant annotations.

Language:Jupyter Notebook14 14 123

NPM-sample-qc

reference implementation of GA4GH WGS Quality Control Standards

Language:mupadMIT8 2 52

quality-control-wgs

Home for the GA4GH Quality Control of Whole Genome Sequencing metrics and reference implementations

Language:Jupyter NotebookApache-2.07 13 11

refget-server-python

An implementation of the Refget v2.0.0 standard using Python

Language:PythonApache-2.04 30

dnaalnqc

ICGC-ARGO workflow for DNA-Seq alignment QC

Language:mupadMIT3 110