MannLabs / CKG

Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge discovery making use of all the information contained in the graph

MannLabs/CKG Issues

Node and edge lists in TSV format
Updated a month ago6
ckg app doesn't load
Updated 2 months ago
Import error can't import name 'Markup' from 'jinja2'
Updated 3 months ago10
Cannot perform minimal update on drugbank
Updated 3 months ago2
Failed to log in when being directed to the login page
Updated 5 months ago
Is this package still maintained?
Updated 7 months ago
Minimal update Error:404 not found and Connection error:{code: Neo.ClientError.Schema.EquivalentSchemaRuleAlreadyExists}
Updated 9 months ago
missing data
Updated 10 months ago
CKG Data Upload does not work
Updated a year ago
TypeError: argument of type 'NoneType' is not iterable
Updated a year ago2
apt-key is deprecated (Docker building)
Updated a year ago
SNF: TypeError: spectral_clustering() takes 1 positional argument but 2 were given
Updated 2 years ago
got no results from ckg app
Closed 2 years ago1
Permission denied: '/CKG/data/reports/
Updated 2 years ago
Internal server error when logging in http://localhost:8050/
Updated 2 years ago6
missing some files in cancerGenomeInterpreter
Updated 2 years ago
Pre-built image on Docker Hub
Updated 2 years ago
The ckg_config.yml file doesn't exist.
Updated 2 years ago1
Neo4j database is not online or page cannot be opened
Updated 2 years ago
Failed to receive a keyserver [16/78]
Updated 2 years ago
Minimal update error
Updated 2 years ago4
Failed to generate report after uploading data
Updated 2 years ago3
Dataset of paper
Updated 2 years ago1
"Out of memory" crash and a little question
Updated 2 years ago
Project creation - Project Tissue/Project Disease - No results found
Closed 2 years ago4
CKG unauthorized login
Closed 2 years ago6
R package install error
Closed 2 years ago1
when click the "import" 500 error occurred
Updated 2 years ago
can not import name"get_current_traceback" from 'werkzeug_debug_tbttools'.
Updated 2 years ago
CKG Docker Container
Closed 2 years ago8
Neo4j and graph problems
Updated 2 years ago3
Latest neo4j dump referenced in dockerfile unavailable
Closed 2 years ago3
Loading data using builder.py fails
Closed 2 years ago5
[docker build] No Durg node information of Neo4j database
Closed 2 years ago2
Neo4j Enterprise
Closed 2 years ago1
Cannot find the mapped_code column in the compound file from FooDB
Updated 2 years ago2
create_user_from_command_line not returning correct results
Updated 2 years ago
docker : Permission denied for mkdr
Closed 2 years ago3
No permission to load database -- running as a different user?
Closed 2 years ago5
[docker build] Docker image size of 64 Gb instead of 150 Gb
Closed 2 years ago3
[docker build] what to expect - neo4j browser?
Updated 2 years ago1
CKG unauthorized login
Closed 4 years ago3
Docker couldn't start ckgapp
Closed 3 years ago10
Improve documentation of data dump
Closed 3 years ago1
Make code pip-installable
Closed 3 years ago2
Missing drug-protein relations
Updated 3 years ago1
Graph builder killed without any error thrown
Closed 3 years ago1
Isuue with building ckg in Neo4j
Closed 3 years ago2
Add system requirements more prominently
Closed 3 years ago1
Samples not being processed
Closed 4 years ago2