Gregory Way's repositories
.github-cytomining
A special GitHub repository for setting the Cytomining organization profile and default community health files.
2018_05_30_ResistanceMechanisms_Kapoor
Predicting pharmacodynamic responses to cancer drugs using cell morphology
aspera-client-docker
Docker image for downloading IDR datasets
cell-health
Predicting Cell Health with Morphological Profiles
cell-health-data
Data processing for the Cell Painting data from the Cell Health experiments
cell-morphology-power-analyses
Power analyses for cell morphology readouts
CFReT_data
Data processing for CFReT pilot images.
cytominer_database-feedstock
A conda-smithy repository for cytominer_database.
CytoSnake
This is not a pipe
CytoTable
Transform data for processing image-based profiling readouts with Pycytominer.
drug_viability_data
Exploring large-scale drug viability datasets
IC_Test
This repository holds all of the research and code used to develop IC Test.
Interstellar_Project
This repository contains the pipelines used to analyze the data sets from the Interstellar collaboration.
jump-datasets
Images and other data from the JUMP Cell Painting Consortium
JUMP-single-cell
Single cell analysis of the JUMP Cell Painting consortium data
lincs-profiling-comparison
Analyzing and comparing signal found in different profiling technologies
mitocheck_data
All information regarding the download and processing of Mitocheck data from IDR study with accession idr0013 (screenA).
MNIST_TD-VAE
Temporal Difference Variational Auto-Encoder (TD-VAE) (Implementation in PyTorch)
nf1_cellpainting_data
This repository contains all the modules to perform image-based analysis with CellProfiler on NF1 Schwann cell data.
NF1_SchwannCell_data
Data processing for NF1 Schwann cell pilot images.
onboarding
Written lab policies and standards often read when joining the lab!
OpenPBTA-manuscript
The manuscript repository for the Open Pediatric Brain Tumor Atlas Project
phenotypic_profiling_model
Training and validating ML model using data from https://github.com/WayScience/mitocheck_data
publicly-available-microscopy-data
Compiling and describing publicly available microscopy datasets
pycytominer
cytominer python package
pycytominer-feedstock
A conda-smithy repository for pycytominer.
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks