Kai Guo's repositories
scellplot
single cell and spatial transcriptomics plot
drug2cell
Gene group activity utility functions for Scanpy
visium_heart
Spatial transcriptomics of heart tissue
tidygroup
Do analysis with group information
rcellmarker
Identify cell type based on cell markers for single cell squencing
annotated_deep_learning_paper_implementations
🧑🏫 60 Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), gans(cyclegan, stylegan2, ...), 🎮 reinforcement learning (ppo, dqn), capsnet, distillation, ... 🧠
KrakenTools
KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
ChatGPT
🔮 ChatGPT Desktop Application (Mac, Windows and Linux)
Machine-Learning-Collection
A resource for learning about Machine learning & Deep Learning
ComputationalGenomicswithR
Computational Genomics with R
Ligand-Receptor-Pairs
Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.
pytorch-tutorial
PyTorch Tutorial for Deep Learning Researchers
workshop-scRNAseq
Single cell RNA sequencing analysis course
excelerate-scRNAseq
Single RNA-seq data analysis with R (Finland, May, 2019)
TFAM
Mitochondrial Transcription Factor A Regulates FOXP3+ T Cell Mediated Maintenance of CD4+ T Cell Landscapes and Immunological Aging
Spaghetti
Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing
R_for_Data_Science
Materials for teaching R and tidyverse
tidymass
tidymass
sceasy
A package to help convert different single-cell data formats to each other