guokai8 / scGSVA

scGSVA: Perform GSVA for single cell RNA seq

guokai8/scGSVA Issues

Error: useNames = NA is defunct. Instead, specify either useNames = TRUE or useNames = FALSE.
Updated a month ago
numbers of columns of arguments do not match
Updated 2 months ago4
no slot of name "counts" for this object of class "Assay5"
Updated 2 months ago4
Discrepancy in results from v0.0.16 to 0.0.17
Updated 6 months ago1
About spatial transcriptomes
Updated 7 months ago3
Memory issue
Updated 7 months ago2
GSVA calculation takes extremely long
Updated 7 months ago3
Cannot locate raw NES
Updated 7 months ago1
'group' column in scgsva result@obj
Updated 7 months ago1
MSIGB annotation
Updated 8 months ago
Use a custom gene set?
Updated 9 months ago6
gsva输出结果在转换成数据框时加上“check.names=FALSE”
Updated 9 months ago1
input<- input[tabulate(summary(input)$i) != 0, , drop = FALSE]
Updated a year ago
More pathways and databases?
Closed a year ago2
Input issue
Updated a year ago2
buildAnnot error:Error in curl::curl_fetch_memory(url, handle = handle) : SSL certificate problem: certificate has expired
Updated a year ago1
buildAnnot error:Error in curl::curl_fetch_memory(url, handle = handle) : SSL certificate problem: certificate has expired
Closed a year ago
Get Error when running buildAnno; Error in curl::curl_fetch_memory(url, handle = handle) : Failure when receiving data from the peer
Closed a year ago
Error after running parallel on HPC
Updated a year ago1
Possible to integrate other pathway data bases such as Reactome, Wiki?
Updated 2 years ago1
heatmap shows all pathway but can not select average top upregulated or down regulated pathway
Updated 2 years ago1
Error in hclust(d, method = method) : size cannot be NA no
Updated 3 years ago2
at file ../Core/cholmod_dense.c, line 102
Updated 3 years ago4