georgiesamaha / configBuilder-nf

Nextflow config builder scripts for supported HPC infrastructures.

georgiesamaha/configBuilder-nf Issues

Infrastructure config - new question: do you want to specify a specific scratch/TMPDIR space
Updated 8 months ago2
Not clear what 'Specify cluster options that should be applied to each process:' means
Updated 8 months ago2
Saying 'yes' for unique resource for a specific processes asks again what executor to use?
Updated 8 months ago1
Infrastructure config - autodetect: which schedulers are available
Closed 8 months ago1
Infrastructure config - autodetect: possible queues
Closed 8 months ago1
Improve documentation on what is a 'custom' vs 'nf-core' configuration...
Closed 8 months ago2
Infrastructure config - autodetect: is a cachedir variable already set, for resuse
Updated 9 months ago1
Infrastructure config - new question: do you want to define a global cache directory
Updated 9 months ago
Infrastructure config - new question: is this for an nf-core config?
Closed 9 months ago
Infrastructure config - new question: do you want autocleanup of work?
Closed 9 months ago
Infrastructure config - autodetect step: detect options for container/software systems
Updated 9 months ago2
Infrastructure config - new question: is this config for a HPC?
Updated a year ago
Feature: `--fast` mode
Updated a year ago1
Pipeline config - new question: would you like to update another module?
Updated a year ago
Pipeline config - new question: what walltime would you like to set for the process
Updated a year ago
Pipeline config - new question: what process would you like to configure?
Updated a year ago
Pipeline config - new question: how many CPUs would you like to set for the process
Updated a year ago
Pipeline config - new question: what memory would you like to set for the process
Updated a year ago
Pipeline config - autodetect: possible modules/processes
Updated a year ago
Pipeline config - new question: what is the path to a pipeline you wish to make config for (if not nf-core)
Updated a year ago
Pipeline config - new question: is this for a nf-core pipeline?
Updated a year ago
Infrastructure config - new question: do you want to specify a certain number of retries
Updated a year ago
Infrastructure config - new question: do you have/want a iGenomes cache
Updated a year ago
Infrastructure config - autodetect: [nf-core only] try to autoscale default process labels depending on max resources
Updated a year ago
Infrastructure config - autodetect: [nf-core only?] find maximum resources across all nodes/machine
Updated a year ago
Reformat codebase for improved modularity
Closed a year ago
Auto-detect if `modules` is used on the system
Closed a year ago
Consider autodetection of job scheduler
Closed a year ago
Possible issues with requirements
Closed a year ago