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Georgie Samaha (georgiesamaha)

georgiesamaha

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Company:Sydney Informatics Hub, University of Sydney

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Sydney-Informatics-Hub

Georgie Samaha's starred repositories

GSC

VCF compression tool

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cdis-manifest

Manifests tracking service versions to release to each environment

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scGPT

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hyena-dna

Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena

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CRMnet

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genslm

GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics

Language:PythonLicense:MITStargazers:116Issues:0Issues:0

Trycycler

A tool for generating consensus long-read assemblies for bacterial genomes

Language:PythonLicense:GPL-3.0Stargazers:305Issues:0Issues:0

biowasm

WebAssembly modules for genomics

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open-interpreter

A natural language interface for computers

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EHDN

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tidbits

SIH's "tech tidbits" blog for sharing useful tools and tips

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OceanOmics-amplicon

A pipeline to analyse marine fish amplicon data

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Bioinformatics

A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common methods.

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HPC_usage_reports

Scripts to pull resource usage data from job logs for Artemis and Gadi into tab-delimited format and to report queue time from job history

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CHM13

The complete sequence of a human genome

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Gadi-benchmarking

Template scripts to automate submission of identical benchmark tasks with increasing compute resources

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wordclouder

R Shiny app to make word clouds

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modern_stats

Notes for Modern Statistics for Modern Biology

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gnomAD_DB

This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. It extracts from a gnomAD vcf the minor allele frequency for each variant.

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igv-reports

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

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pgsc_calc

The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation

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rnaflow

A simple RNA-Seq differential gene expression pipeline using Nextflow

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awesome-ggplot2

A curated list of awesome ggplot2 tutorials, packages etc.

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SDS375

SDS 375 Data Visualization in R

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RIdeogram

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gget

šŸ§¬ gget enables efficient querying of genomic reference databases

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FriendsDontLetFriends

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

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BitEpi

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gosling.js

Grammar of Scalable Linked Interactive Nucleotide Graphics

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semver

Semantic Versioning Specification

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