Frank Bergmann's repositories
test-copasi
Test for Github Actions
pyodide-copasi
Vue3 Project using Pyodide / basico and python-copasi emscripten
SimBioUI
Web systems biology simulator
fbergmann.github.io
user page
deviser
Design Explorer and Viewer for Iterative SBML Enhancement of Representations
sed-ml.github.io
SED-ML website
makesbml
Simple site to convert antimony to sbml
PEtab
PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
AMICI
Advanced Multilanguage Interface to CVODES and IDAS
fbc_curation
FROG analysis in python for the reproducibility of FBC models
FBA_perturbation
a toolbox to perturb FBA flux distribution in constraint-based metabolic networks
liblx
The XML parser portion of LibSBML as a separate library.
harmony_scripts
Utility scripts written during HARMONY 2021
spatial-sbml
libraries & tools for spatial simulation of SBML models
pyabc-copasi
Example Scripts for using COPASI simulations in pyABC
pyABC
distributed, likelihood-free inference
Biosimulations_COPASI
COPASI Simulator for BioSimulations
PyEnzyme
PyEnzyme
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
conan-libsbml
Conan build recipe for libSBML
conan-libsedml
conan recipe for libSEDML
conan-libnuml
Conan recepie for libnuml
CoRC
The Copasi R connector, a high-level R API for Copasi
bioconda-recipes
Conda recipes for the bioconda channel.
libsbml_test
test for libsbml git repo
memesa-tools
This collection of tools forms the basis of a pipeline for the complete enumeration of the number of solutions present in a model that maximizes a single objective function
dsmts
Discrete stochastic models test suite