enormandeau

SDRPlusPlus

Cross-Platform SDR Software

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

polaris

Polaris is a music streaming application, designed to let you enjoy your music collection from any computer or mobile device.

mosdepth

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

BRAKER

BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

pgap

NCBI Prokaryotic Genome Annotation Pipeline

Filtlong

quality filtering tool for long reads

verkko

Clair3

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

kmcp

Accurate metagenomic profiling && Fast large-scale sequence/genome searching

compleasm

A genome completeness evaluation tool based on miniprot

SComatic

A tool for detecting somatic variants in single cell data

MorseRunner

chopper

odp

oxford dot plots

LRA

Long read aligner

fcs

Foreign Contamination Screening caller scripts and documentation

not1mm

Not1MM != N1MM, An amateur radio contest logger for Linux.

bedder-rs

an API for intersections of genomic data

shasta

De novo assembly from Oxford Nanopore reads.

sradownloader

A script to make downloading of SRA/GEO data easier

morse

Morse code audio generation tool

wgd

wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication

bioinformatics_tool_recommendation

cellphy

CellPhy: accurate and fast probabilistic inference of single-cell phylogenies

PhylOligo

Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.

BIST-Python-Bootcamp

Scientific python course material for a few days.

loco-pipe

loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genome sequencing (lcWGS) data

SNPs_indels_SR

Call SNPs and indels from short read data

angsd_pipeline

lcWGS data analysis for population genomic, including parallelization and deviant SNPs filtering