conchoecia / odp

oxford dot plots

conchoecia/odp Issues

NCBIgff2chrom -> gxf2chrom
Updated 5 months ago
on main branch, color pairs vs HMMs not working
Closed 6 months ago1
IndexError: list index out of range
Closed 6 months ago4
Some protein sequences in your file are identical.
Closed 6 months ago6
find duplicate protein substrings with cd-hit
Updated 6 months ago2
Jobs/rules are running out of sequence and causing input file errors
Closed 6 months ago5
Getting error with unclear reason
Closed 6 months ago2
problem converting gff
Updated 6 months ago3
Questions about how to determine ALGs
Closed 6 months ago5
findfont: Generic family 'sans-serif' not found because none of the following families were found: Helvetica
Closed 6 months ago16
decay script prints out algs as a set
Closed 6 months ago1
scaffold plotting order doesn't seem to work
Closed 6 months ago1
remove awk dependency
Updated 6 months ago1
IndexError: list index out of range
Closed 6 months ago4
Add functions to check file type for odpf.check_species_input_legality()
Closed 6 months ago2
Start and Stop in GFF to Chrom file
Closed 6 months ago2
Length mismatch: Expected axis has 4 elements, new values have 5 elements
Closed 6 months ago2
ValueError in file /odp/scripts/odp, line 598: No objects to concatenate
Closed 6 months ago2
Runtime for odp_rbh_to_alignments when building new ALGs
Closed 6 months ago3
setting with copy warning in odp
Closed 6 months ago2
color_manager issue
Closed 6 months ago1
Error in analysis_D_and_FET / LG coloring
Closed 6 months ago5
no attribute 'cores'
Closed 6 months ago4
Not supported between instances of 'str' and 'int
Closed 6 months ago1
Segmentation fault following Matplotlib GUI usage warning
Closed 6 months ago4
Analysis of data with a large number of duplicates
Closed 6 months ago2
chrom from NCBI not getting all the intervals
Updated 6 months ago
'Workflow' object has no attribute 'cores'
Closed a year ago3
Error
Closed 9 months ago
docker image
Updated 9 months ago1
Error in rule plot_synteny_nocolor
Closed a year ago
make odp_nway_rbh assign colors
Closed a year ago1
rbh_to_alignments sometimes pulls in too many proteins
Closed a year ago2
Build in legality check for .chrom, .pep, and .fasta files
Closed a year ago
make odp_nway_rbh plot a ribbon diagram
Updated a year ago8
check that the program isn't being run in the install directory
Closed a year ago
Draw the ribbon diagrams without clipping masks
Updated a year ago
ALG with odp_nway_rbh fails with blast
Closed a year ago10
Error: Sequence file _prots.pep is empty or misformatted
Closed a year ago2
rbh_to_subway fails with no error message
Closed a year ago5
Problems in finding ancestral linkage groups
Closed a year ago9
Simple execution fails
Closed a year ago3
Enable ALGs to be one-species or two-species
Updated a year ago
The plot_LGs flag is no working as intended
Closed a year ago1
remove all references to prot_to_loc
Closed a year ago
add minscafsize to example odp config
Closed a year ago
genome_rearrangement_simulation should only shuffle one genome per simulation
Updated a year ago
Implement gff ingestion
Updated a year ago
remove bioawk dependency
Closed a year ago
get rid of filter_fasta_chrom everywhere except odp_functions
Closed a year ago1