ebolyen

q2galaxy

Prototype interface for automatically generating Galaxy tools from QIIME 2 actions

developing-with-qiime2

Developing with QIIME 2

ebolyen.github.io

environment-files

galaxy-tools

WIP: not ready for use yet

gneiss

compositional statistics and visualization toolbox

package-integration

q2-assembly

QIIME 2 plugin for (meta)genome assembly.

q2-composition

QIIME2 plugin for compositional data analysis

q2-demux

Map sequence barcodes to sample identifiers.

q2-diversity

q2-diversity-lib

q2-feature-table

Official QIIME 2 plugin supporting normalization of sample by feature tables.

q2-fmt

WIP

q2-gneiss

QIIME2 plugin for Gneiss

q2-moshpit

MOdular SHotgun metagenome Pipelines with Integrated provenance Tracking

q2-sapienns

q2-stats

q2-types

Definitions of common QIIME 2 types.

q2-types-genomics

QIIME 2 types for genomics plugins.

q2cli

Command line interface for QIIME 2

q2dataflow

q2lint

Linter for official QIIME 2 software.

qiime2

The name says it all...

RESCRIPt

REference Sequence annotation and CuRatIon Pipeline

scikit-bio

Core objects, functions and statistics for working with biological data in Python.

scikit-bio-feedstock

A conda-smithy repository for scikit-bio.

static-site-infrastructure

view.qiime.org

vm-playbooks

Ansible playbooks for QIIME 2 environments