Tom Conway's repositories
long-read-plotting
A tool for plotting long read alignments
permutation-rs
A Rust library for creating random access permutations.
peg-ts
Parsing Expression Grammar library for typescript
warpy
A port of the core elements of the nf-core/wf-human-variation nanopore pipeline to bpipe
readSlicer
Extract slices of reads from BAM files
psi-core-js
Private Set Intersection tooling in Typescript/Javascript
strobealign
Aligns short reads using dynamic seed size with strobemers
squishy
Filter BAM files to remove doubly soft-clipped reads.
stabby
interval stabbing in rust
ransel
Rust library for succinct ranks/select data structures.
mazab
A tool for converting BAM files back into FASTQ while respecting paired ends
ytea
Detection of mobile element insertions
noodles
Bioinformatics I/O libraries in Rust
lohator
Search for genomic regions exhibiting loss of heterozygosity
algorithms-js
Useful algorithms and associated data structures in Javascript/Typescript
asnone
ASN.1 Library
FREEC
Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
Jasmine
Jasmine: SV Merging Across Samples
pedigree-tools-js
Javascript/Typescript tools for working with pedigrees
xTea
Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
bamsurgeon
tools for adding mutations to existing .bam files, used for testing mutation callers
dasbox
Data Asset Transfer Box
remark-mcr
remark plugin for laying out modernist cuisine style recipes
DefinitelyTyped
The repository for high quality TypeScript type definitions.
unionfind-js
Disjoint Set data structure for Javascript/Typescript