Tom Conway's repositories
pedigree-tools-js
Javascript/Typescript tools for working with pedigrees
algorithms-js
Useful algorithms and associated data structures in Javascript/Typescript
asnone
ASN.1 Library
bamsurgeon
tools for adding mutations to existing .bam files, used for testing mutation callers
dasbox
Data Asset Transfer Box
DefinitelyTyped
The repository for high quality TypeScript type definitions.
FREEC
Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
kmer-js
Basic k-mer manipulation in Javascript/Typescript
lohator
Search for genomic regions exhibiting loss of heterozygosity
mazab
A tool for converting BAM files back into FASTQ while respecting paired ends
moogy
Library of mathematical classes and functions in Javascript
noodles
Bioinformatics I/O libraries in Rust
pdffle
TypeScript/JavaScript library for manipulating PDF documents
permutation-rs
A Rust library for creating random access permutations.
psi-core-js
Private Set Intersection tooling in Typescript/Javascript
ransel
Rust library for succinct ranks/select data structures.
readSlicer
Extract slices of reads from BAM files
remark-mcr
remark plugin for laying out modernist cuisine style recipes
rope-js
Javascript/Typescript implementation of Rope data structures
squishy
Filter BAM files to remove doubly soft-clipped reads.
stabby
interval stabbing in rust
strobealign
Aligns short reads using dynamic seed size with strobemers
unionfind-js
Disjoint Set data structure for Javascript/Typescript
vcf-js
VCF parsing for Javascript/Typescript
xTea
Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
ytea
Detection of mobile element insertions