Tom Conway's repositories
samtools-docker
Docker image for samtools
bpipe
Bpipe - a tool for running and managing bioinformatics pipelines
drop-docker
Docker image for running the Drop package
outrider-docker
Docker container for OUTRIDER
notima
A base C++ project built with CMake
sequenza-r-docker
Docker container for running the R tools for sequenza
sequenza-utils-docker
A Docker container for sequenza-utils
janis-bioinformatics
Repository of bioinformatics tools for the pipelines module
essential-r
R image with some "essential" packages installed.
rmarkdown-docker
Docker container with RMarkdown support
iotl
Efficient C++ IO by using templates rather than inheritance.
wregoolar
Regular expression manipulation
squeal
Experiments in SQL query resolution
barc
Make sheets of barcode labels
basecounts
Code for grovelling over short read alignments
whisper-docker
A docker container for whisper.
janis-unix
Unix tools and data types for Janis
janis-pipelines
Example pipelines with Janis
janis-docker
A docker build environment for janis
janis-assistant
A language and engine agnostic workflow runner for Janis
janis-docker-build
Files for creating a build environment for the janis workflow system
zotmer
A python k-mer application workbench
scripts
Collection of Peter Mac Scripts
janis-workshops
Workshops for the Janis pipeline framework
janis
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows